Genetic diversity study in Napier grass collections and progeny plants
Data and Resources
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Genetic diversity in Napier grass
The data set contains high density genome-wide SNP and SilicoDArT markers on generated from the genotyping of 258 Napier grass accessions on the DArTseq genotyping-by-sequencing platform. Of these, sequence tags representing 105 Napier grass accessions have been published previously (see doi.org:10.1038/s41598-019-43406-0). The remaining 153 accessions are Napier grass progeny plants raised from seeds of 13 mother plants from the ILRI collection.
Available formats
ZIP18
Dataset metadata
Item | Value |
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Created | Wednesday 4th of March, 2020 |
Last updated | Monday 14th of August, 2023 |
Dataset type | Non-spatial |
Abstract | Genetic diversity study in Napier grass collections and progeny plants. The dataset contains genome-wide sequence tags, in FASTQ file format, generated from the genotyping of 258 Napier grass accessions on the DArTseq genotyping-by-sequencing platform. Of these, sequence tags representing 105 Napier grass accessions have been published previously (see doi.org:10.1038/s41598-019-43406-0). The remaining 153 accessions are Napier grass progeny plants raised from seeds of 13 mother plants from the ILRI collection. Publication link: Muktar, M.S., Teshome, A., Hanson, J. et al. Genotyping by sequencing provides new insights into the diversity of Napier grass (Cenchrus purpureus) and reveals variation in genome-wide LD patterns between collections. Sci Rep 9, 6936 (2019). https://doi.org/10.1038/s41598-019-43406-0 |
How this dataset could be used by others | These can be used for sequence alignment, mapping and annotation; SNP calling |
Principal investigator | Jones, C.S |
Principal investigator email | C.S.Jones@cgiar.org |
Other researchers involved | Muktar, M.S, Habte, E. |
Contact person | Muktar, M.S |
Contact email | M.Shehabu@cgiar.org |
Custodian | Jones, C.S |
Custodian email | C.S.Jones@cgiar.org |
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Availability date | 04/03/2020 |
License | Creative Commons Attribution |
Release of confidential data? | No |
Consent obtained? | No |
Intellectual Property Ownership | N/A |
Citation | Jones, C.S, Mutar, M.S, Habte, E. (2020). Genetic diversity study in Napier grass collections and progeny plants. Available at http://data.ilir.org/dataset/geneticdiversitynapier, retrieved on (add date here) |
Project metadata
Item | Value |
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Project title | Genetic diversity study in Napier grass collections and progeny plants. |
Project abstract | Genetic diversity study in Napier grass collections and progeny plants. Genotyping by sequencing files. Publication link: Muktar, M.S., Teshome, A., Hanson, J. et al. Genotyping by sequencing provides new insights into the diversity of Napier grass (Cenchrus purpureus) and reveals variation in genome-wide LD patterns between collections. Sci Rep 9, 6936 (2019). https://doi.org/10.1038/s41598-019-43406-0 Species: Cenchrus purpureus syn. Pennisetum purpureum Tags: DNA sequence, feed crops, Pennisetum purpureum, genebanks, collections |
Grant code | CRP001 |
Donor | CGIAR W1/2 |
Start date | 01/01/2017 |
End date | 31/12/2021 |
Principal investigator | Jones, C.S |
Other staff involved | Muktar, M.S, Habte, E., Abel Teshome, Jean Hanson, Alemayehu T. Negawo, Jean-Baka Domelevo Entfellner & Ki-Won Lee |
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