Genetic diversity study in Napier grass collections and progeny plants
Data and Resources
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Genetic diversity in Napier grass
The dataset contains genome-wide sequence tags, in FASTQ file format, generated from the genotyping of 258 Napier grass accessions on the DArTseq genotyping-by-sequencing platform. Of these, sequence tags representing 105 Napier grass accessions have been published previously (see doi.org:10.1038/s41598-019-43406-0). The remaining 153 accessions are Napier grass progeny plants raised from seeds of 13 mother plants from the ILRI collection.
Available formats
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Dataset metadata
| Item | Value |
|---|---|
| Created | Wednesday 4th of March, 2020 |
| Last updated | Friday 6th of March, 2020 |
| Dataset type | Non-spatial |
| Abstract | Genetic diversity study in Napier grass collections and progeny plants. The dataset contains genome-wide sequence tags, in FASTQ file format, generated from the genotyping of 258 Napier grass accessions on the DArTseq genotyping-by-sequencing platform. Of these, sequence tags representing 105 Napier grass accessions have been published previously (see doi.org:10.1038/s41598-019-43406-0). The remaining 153 accessions are Napier grass progeny plants raised from seeds of 13 mother plants from the ILRI collection. Publication link: Muktar, M.S., Teshome, A., Hanson, J. et al. Genotyping by sequencing provides new insights into the diversity of Napier grass (Cenchrus purpureus) and reveals variation in genome-wide LD patterns between collections. Sci Rep 9, 6936 (2019). https://doi.org/10.1038/s41598-019-43406-0 |
| How this dataset could be used by others | These can be used for sequence alignment, mapping and annotation; SNP calling |
| Principal investigator | Jones, C.S |
| Principal investigator email | C.S.Jones@cgiar.org |
| Other researchers involved | Muktar, M.S, Habte, E. |
| Contact person | Muktar, M.S |
| Contact email | M.Shehabu@cgiar.org |
| Custodian | Jones, C.S |
| Custodian email | C.S.Jones@cgiar.org |
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| Availability date | 04/03/2020 |
| License | Creative Commons Attribution |
| Release of confidential data? | No |
| Consent obtained? | No |
| Intellectual Property Ownership | N/A |
| Citation | Jones, C.S, Mutar, M.S, Habte, E. (2020). Genetic diversity study in Napier grass collections and progeny plants. Available at http://data.ilir.org/dataset/geneticdiversitynapier, retrieved on (add date here) |
Project metadata
| Item | Value |
|---|---|
| Project title | Genetic diversity study in Napier grass collections and progeny plants. |
| Project abstract | Genetic diversity study in Napier grass collections and progeny plants. Genotyping by sequencing files. Publication link: Muktar, M.S., Teshome, A., Hanson, J. et al. Genotyping by sequencing provides new insights into the diversity of Napier grass (Cenchrus purpureus) and reveals variation in genome-wide LD patterns between collections. Sci Rep 9, 6936 (2019). https://doi.org/10.1038/s41598-019-43406-0 Species: Cenchrus purpureus syn. Pennisetum purpureum Tags: DNA sequence, feed crops, Pennisetum purpureum, genebanks, collections |
| Grant code | CRP001 |
| Donor | CGIAR W1/2 |
| Start date | 01/01/2017 |
| End date | 31/12/2021 |
| Principal investigator | Jones, C.S |
| Other staff involved | Muktar, M.S, Habte, E., Abel Teshome, Jean Hanson, Alemayehu T. Negawo, Jean-Baka Domelevo Entfellner & Ki-Won Lee |
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