Genetic diversity study in Napier grass collections and progeny plants

Data and Resources

  • Genetic diversity in Napier grass

    The dataset contains genome-wide sequence tags, in FASTQ file format, generated from the genotyping of 258 Napier grass accessions on the DArTseq genotyping-by-sequencing platform. Of these, sequence tags representing 105 Napier grass accessions have been published previously (see doi.org:10.1038/s41598-019-43406-0). The remaining 153 accessions are Napier grass progeny plants raised from seeds of 13 mother plants from the ILRI collection.

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Dataset metadata

Item Value
Created Wednesday 4th of March, 2020
Last updated Friday 6th of March, 2020
Dataset type Non-spatial
Abstract Genetic diversity study in Napier grass collections and progeny plants. The dataset contains genome-wide sequence tags, in FASTQ file format, generated from the genotyping of 258 Napier grass accessions on the DArTseq genotyping-by-sequencing platform. Of these, sequence tags representing 105 Napier grass accessions have been published previously (see doi.org:10.1038/s41598-019-43406-0). The remaining 153 accessions are Napier grass progeny plants raised from seeds of 13 mother plants from the ILRI collection. Publication link: Muktar, M.S., Teshome, A., Hanson, J. et al. Genotyping by sequencing provides new insights into the diversity of Napier grass (Cenchrus purpureus) and reveals variation in genome-wide LD patterns between collections. Sci Rep 9, 6936 (2019). https://doi.org/10.1038/s41598-019-43406-0
How this dataset could be used by others These can be used for sequence alignment, mapping and annotation; SNP calling
Principal investigator Jones, C.S
Principal investigator email C.S.Jones@cgiar.org
Other researchers involved Muktar, M.S, Habte, E.
Contact person Muktar, M.S
Contact email M.Shehabu@cgiar.org
Custodian Jones, C.S
Custodian email C.S.Jones@cgiar.org
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Availability date 04/03/2020
License Creative Commons Attribution
Release of confidential data? No
Consent obtained? No
Intellectual Property Ownership N/A
Citation Jones, C.S, Mutar, M.S, Habte, E. (2020). Genetic diversity study in Napier grass collections and progeny plants. Available at http://data.ilir.org/dataset/geneticdiversitynapier, retrieved on (add date here)

Project metadata

Item Value
Project title Genetic diversity study in Napier grass collections and progeny plants.
Project abstract Genetic diversity study in Napier grass collections and progeny plants. Genotyping by sequencing files. Publication link: Muktar, M.S., Teshome, A., Hanson, J. et al. Genotyping by sequencing provides new insights into the diversity of Napier grass (Cenchrus purpureus) and reveals variation in genome-wide LD patterns between collections. Sci Rep 9, 6936 (2019). https://doi.org/10.1038/s41598-019-43406-0 Species: Cenchrus purpureus syn. Pennisetum purpureum Tags: DNA sequence, feed crops, Pennisetum purpureum, genebanks, collections
Grant code CRP001
Donor CGIAR W1/2
Start date 01/01/2017
End date 31/12/2021
Principal investigator Jones, C.S
Other staff involved Muktar, M.S, Habte, E., Abel Teshome, Jean Hanson, Alemayehu T. Negawo, Jean-Baka Domelevo Entfellner & Ki-Won Lee
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